PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04476.1.p
Common NameEUGRSUZ_H04476, LOC104415541
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 254aa    MW: 28136.9 Da    PI: 5.2549
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04476.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.88.6e-55761791101
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql+sfw++q   i++++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd+fd
  Eucgr.H04476.1.p  76 QLQSFWANQyqeIDRVADFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDVFD 168
                       89******9888999****************************************************************************** PP

             NF-YC  91 flvdivprdel 101
                       flvdivpr+el
  Eucgr.H04476.1.p 169 FLVDIVPREEL 179
                       ********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.71E-3358170IPR009072Histone-fold
PfamPF008082.3E-2198161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.6E-3799176IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDQQGHGQPP PIGVVPAAGQ LPYGTMPYQP GQMIGPSSFP HIQPTSQPQP PGSQLAHNQL  60
AYQQIHQQQQ QQLQQQLQSF WANQYQEIDR VADFKNHSLP LARIKKIMKA DEDVRMISAE  120
APIVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDVFDFL VDIVPREELK  180
EEGLGTVPGG VLPASGPVDG LPYCYVPPQQ VCQAGPPGMF VGKGVVDPAM YPYMAQQMCP  240
ETSEQQQSPS DHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B8e-41911761297NF-YC
4awl_C6e-4191176994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-4191176994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04476.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025171.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_010025170.10.0PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ8L4B22e-81NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A059B6L60.0A0A059B6L6_EUCGR; Uncharacterized protein
STRINGPOPTR_0005s03790.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-75nuclear factor Y, subunit C9